IL_8FIZ_173

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUG*CUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_173 not in the Motif Atlas

Homologous match to IL_5J7L_353

Geometric discrepancy: 0.0937

The information below is about IL_5J7L_353

Detailed Annotation

Multiple bulged bases with non-canonical cWW

Broad Annotation

Multiple bulged bases with non-canonical cWW

Motif group

IL_64231.5

Basepair signature

cWW-cWW-L-R-L-cWW

Number of instances in this motif group

11

Unit IDs

8FIZ|1|BA|G|2843
8FIZ|1|BA|G|2844
8FIZ|1|BA|U|2845
8FIZ|1|BA|G|2846
*
8FIZ|1|BA|C|2870
8FIZ|1|BA|U|2871
8FIZ|1|BA|A|2872
8FIZ|1|BA|A|2873
8FIZ|1|BA|C|2874

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BV

50S ribosomal protein L17

Chain BW

50S ribosomal protein L19