IL_8FIZ_187

3D structure

PDB id

8FIZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of E. coli 70S Ribosome containing mRNA and tRNA (in the transcription-translation complex)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAUUC*GUUAU

Length

10 nucleotides

Bulged bases

8FIZ|1|BA|U|931

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FIZ_187 not in the Motif Atlas

Geometric match to IL_5J7L_399

Geometric discrepancy: 0.1518

The information below is about IL_5J7L_399

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_96236.1

Basepair signature

cWW-tWW-cWW-L-cWW

Number of instances in this motif group

1

Unit IDs

8FIZ|1|BA|A|844
8FIZ|1|BA|A|845
8FIZ|1|BA|U|846
8FIZ|1|BA|U|847
8FIZ|1|BA|C|848
*
8FIZ|1|BA|G|930
8FIZ|1|BA|U|931
8FIZ|1|BA|U|932
8FIZ|1|BA|A|933
8FIZ|1|BA|U|934

Current chains

Chain BA

23S rRNA

Nearby chains

Chain BQ

50S ribosomal protein L30