IL_8FKP_001
3D structure
- PDB id
- 8FKP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.85 Å
Loop
- Sequence
- GUGGAUC*GUGAAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FKP_001 not in the Motif Atlas
- Homologous match to IL_5TBW_015
- Geometric discrepancy: 0.0887
- The information below is about IL_5TBW_015
- Detailed Annotation
- Triple sheared with non-canonical cWW
- Broad Annotation
- Triple sheared
- Motif group
- IL_66414.7
- Basepair signature
- cWW-L-R-tSH-tSH-tHS-cWW-cWW
- Number of instances in this motif group
- 7
Unit IDs
8FKP|1|L1|G|13
8FKP|1|L1|U|14
8FKP|1|L1|G|15
8FKP|1|L1|G|16
8FKP|1|L1|A|17
8FKP|1|L1|U|18
8FKP|1|L1|C|19
*
8FKP|1|L3|G|415
8FKP|1|L3|U|416
8FKP|1|L3|G|417
8FKP|1|L3|A|418
8FKP|1|L3|A|419
8FKP|1|L3|A|420
8FKP|1|L3|C|421
Current chains
- Chain L1
- 5.8S rRNA
- Chain L3
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L17
- Chain LQ
- 60S ribosomal protein L32
- Chain NS
- Ribosome production factor 1
- Chain SA
- 60S ribosomal protein L4
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