IL_8FKP_011

3D structure

PDB id

8FKP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GCA*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKP_011 not in the Motif Atlas

Geometric match to IL_3W3S_003

Geometric discrepancy: 0.109

The information below is about IL_3W3S_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

8FKP|1|L2|G|64
8FKP|1|L2|C|65
8FKP|1|L2|A|66
*
8FKP|1|L2|U|84
8FKP|1|L2|C|85
8FKP|1|L2|C|86

Current chains

Chain L2

ITS2 rRNA

Nearby chains

Chain SH

MKI67 FHA domain-interacting nucleolar phosphoprotein

Chain SL

Ribosomal L1 domain-containing protein 1