IL_8FKP_016

3D structure

PDB id

8FKP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

GCUCC*GCCC

Length

9 nucleotides

Bulged bases

8FKP|1|L3|C|170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FKP|1|L3|G|169
8FKP|1|L3|C|170
8FKP|1|L3|U|171
8FKP|1|L3|C|172
8FKP|1|L3|C|173
*
8FKP|1|L3|G|263
8FKP|1|L3|C|264
8FKP|1|L3|C|265
8FKP|1|L3|C|266

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L6

60S ribosomal protein L13

Chain LS

60S ribosomal protein L35

Chain SE

60S ribosomal protein L7a

Chain SS

Ribosome biogenesis protein BOP1

Chain SZ

Nucleolar protein 16