IL_8FKP_040

3D structure

PDB id

8FKP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

UUU*AUA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKP_040 not in the Motif Atlas

Homologous match to IL_8C3A_037

Geometric discrepancy: 0.1029

The information below is about IL_8C3A_037

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8FKP|1|L3|U|1671
8FKP|1|L3|U|1672
8FKP|1|L3|U|1673
*
8FKP|1|L3|A|1682
8FKP|1|L3|U|1683
8FKP|1|L3|A|1684

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L21

Chain SN

Probable rRNA-processing protein EBP2