IL_8FKP_044

3D structure

PDB id

8FKP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

ACUU*AACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKP_044 not in the Motif Atlas

Geometric match to IL_1D4R_001

Geometric discrepancy: 0.1633

The information below is about IL_1D4R_001

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

8FKP|1|L3|A|1858
8FKP|1|L3|C|1859
8FKP|1|L3|U|1860
8FKP|1|L3|U|1861
*
8FKP|1|L3|A|1873
8FKP|1|L3|A|1874
8FKP|1|L3|C|1875
8FKP|1|L3|U|1876

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L21

Chain SN

Probable rRNA-processing protein EBP2