IL_8FKP_067

3D structure

PDB id

8FKP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CCUCGGAUAG*UGCGGAGUG

Length

19 nucleotides

Bulged bases

8FKP|1|L3|C|4757, 8FKP|1|L3|U|4758, 8FKP|1|L3|U|4763, 8FKP|1|L3|A|4764, 8FKP|1|L3|G|4870, 8FKP|1|L3|G|4873, 8FKP|1|L3|U|4876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FKP|1|L3|C|4756
8FKP|1|L3|C|4757
8FKP|1|L3|U|4758
8FKP|1|L3|C|4759
8FKP|1|L3|G|4760
8FKP|1|L3|G|4761
8FKP|1|L3|A|4762
8FKP|1|L3|U|4763
8FKP|1|L3|A|4764
8FKP|1|L3|G|4765
*
8FKP|1|L3|U|4869
8FKP|1|L3|G|4870
8FKP|1|L3|C|4871
8FKP|1|L3|G|4872
8FKP|1|L3|G|4873
8FKP|1|L3|A|4874
8FKP|1|L3|G|4875
8FKP|1|L3|U|4876
8FKP|1|L3|G|4877

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L7

60S ribosomal protein L13a

Chain L8

60S ribosomal protein L14

Chain LC

60S ribosomal protein L18a

Chain SC

60S ribosomal protein L6