IL_8FKP_069

3D structure

PDB id

8FKP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

UCCUG*CGUCA

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKP_069 not in the Motif Atlas

Geometric match to IL_8S95_002

Geometric discrepancy: 0.346

The information below is about IL_8S95_002

Detailed Annotation

Triple non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8FKP|1|L3|U|4885
8FKP|1|L3|C|4886
8FKP|1|L3|C|4887
8FKP|1|L3|U|4888
8FKP|1|L3|G|4889
*
8FKP|1|L3|C|4930
8FKP|1|L3|G|4931
8FKP|1|L3|U|4932
8FKP|1|L3|C|4933
8FKP|1|L3|A|4934

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L7

60S ribosomal protein L13a

Chain L8

60S ribosomal protein L14

Chain SC

60S ribosomal protein L6