IL_8FKP_078

3D structure

PDB id

8FKP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKP_078 not in the Motif Atlas

Geometric match to IL_3D0U_002

Geometric discrepancy: 0.2355

The information below is about IL_3D0U_002

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8FKP|1|L3|A|5014
8FKP|1|L3|G|5015
8FKP|1|L3|A|5016
8FKP|1|L3|G|5017
*
8FKP|1|L3|C|5032
8FKP|1|L3|G|5033
8FKP|1|L3|A|5034
8FKP|1|L3|U|5035

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NG

RRP15-like protein