IL_8FKP_081
3D structure
- PDB id
- 8FKP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State A1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.85 Å
Loop
- Sequence
- CAGUCGAGAGUGGAC*GCGGACGCUACG
- Length
- 27 nucleotides
- Bulged bases
- 8FKP|1|L3|G|2089, 8FKP|1|L3|A|2093, 8FKP|1|L3|U|2097, 8FKP|1|L3|C|2260, 8FKP|1|L3|C|2266, 8FKP|1|L3|U|2267, 8FKP|1|L3|C|2269
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8FKP|1|L3|C|2087
8FKP|1|L3|A|2088
8FKP|1|L3|G|2089
8FKP|1|L3|U|2090
8FKP|1|L3|C|2091
8FKP|1|L3|G|2092
8FKP|1|L3|A|2093
8FKP|1|L3|G|2094
8FKP|1|L3|A|2095
8FKP|1|L3|G|2096
8FKP|1|L3|U|2097
8FKP|1|L3|G|2098
8FKP|1|L3|G|2099
8FKP|1|L3|A|2100
8FKP|1|L3|C|2101
*
8FKP|1|L3|G|2259
8FKP|1|L3|C|2260
8FKP|1|L3|G|2261
8FKP|1|L3|G|2262
8FKP|1|L3|A|2263
8FKP|1|L3|C|2264
8FKP|1|L3|G|2265
8FKP|1|L3|C|2266
8FKP|1|L3|U|2267
8FKP|1|L3|A|2268
8FKP|1|L3|C|2269
8FKP|1|L3|G|2270
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain LB
- 60S ribosomal protein L18
- Chain LQ
- 60S ribosomal protein L32
- Chain NM
- Protein MAK16 homolog
- Chain NO
- Ribosomal RNA processing protein 1 homolog A
- Chain SA
- 60S ribosomal protein L4
- Chain SC
- 60S ribosomal protein L6
- Chain SD
- 60S ribosomal protein L7
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