IL_8FKQ_021

3D structure

PDB id

8FKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

GAAC*GAGUUCAAGAGGGC

Length

18 nucleotides

Bulged bases

8FKQ|1|L3|G|409, 8FKQ|1|L3|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKQ_021 not in the Motif Atlas

Homologous match to IL_8C3A_015

Geometric discrepancy: 0.1819

The information below is about IL_8C3A_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.7

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

8FKQ|1|L3|G|387
8FKQ|1|L3|A|388
8FKQ|1|L3|A|389
8FKQ|1|L3|C|390
*
8FKQ|1|L3|G|401
8FKQ|1|L3|A|402
8FKQ|1|L3|G|403
8FKQ|1|L3|U|404
8FKQ|1|L3|U|405
8FKQ|1|L3|C|406
8FKQ|1|L3|A|407
8FKQ|1|L3|A|408
8FKQ|1|L3|G|409
8FKQ|1|L3|A|410
8FKQ|1|L3|G|411
8FKQ|1|L3|G|412
8FKQ|1|L3|G|413
8FKQ|1|L3|C|414

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L1

5.8S ribosomal RNA; 5.8S rRNA

Chain LA

60S ribosomal protein L17

Chain LI

60S ribosomal protein L26