IL_8FKQ_047

3D structure

PDB id

8FKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CGCCCGAU*GG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKQ_047 not in the Motif Atlas

Geometric match to IL_7RQB_037

Geometric discrepancy: 0.1326

The information below is about IL_7RQB_037

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_15861.7

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

12

Unit IDs

8FKQ|1|L3|C|1911
8FKQ|1|L3|G|1912
8FKQ|1|L3|C|1913
8FKQ|1|L3|C|1914
8FKQ|1|L3|C|1915
8FKQ|1|L3|G|1916
8FKQ|1|L3|A|1917
8FKQ|1|L3|U|1918
*
8FKQ|1|L3|G|2064
8FKQ|1|L3|G|2065

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L7

60S ribosomal protein L13a

Chain LC

60S ribosomal protein L18a

Chain LT

60S ribosomal protein L35a

Chain SD

60S ribosomal protein L7

Chain SN

Probable rRNA-processing protein EBP2