IL_8FKQ_068

3D structure

PDB id

8FKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CCUCGGAUAG*UGCGGAGUG

Length

19 nucleotides

Bulged bases

8FKQ|1|L3|C|4757, 8FKQ|1|L3|U|4758, 8FKQ|1|L3|A|4764, 8FKQ|1|L3|G|4870, 8FKQ|1|L3|G|4873, 8FKQ|1|L3|U|4876

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FKQ|1|L3|C|4756
8FKQ|1|L3|C|4757
8FKQ|1|L3|U|4758
8FKQ|1|L3|C|4759
8FKQ|1|L3|G|4760
8FKQ|1|L3|G|4761
8FKQ|1|L3|A|4762
8FKQ|1|L3|U|4763
8FKQ|1|L3|A|4764
8FKQ|1|L3|G|4765
*
8FKQ|1|L3|U|4869
8FKQ|1|L3|G|4870
8FKQ|1|L3|C|4871
8FKQ|1|L3|G|4872
8FKQ|1|L3|G|4873
8FKQ|1|L3|A|4874
8FKQ|1|L3|G|4875
8FKQ|1|L3|U|4876
8FKQ|1|L3|G|4877

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L7

60S ribosomal protein L13a

Chain L8

60S ribosomal protein L14

Chain LC

60S ribosomal protein L18a

Chain SC

60S ribosomal protein L6