IL_8FKR_092

3D structure

PDB id

8FKR (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.89 Å

Loop

Sequence

CGCG*CUG

Length

7 nucleotides

Bulged bases

8FKR|1|L3|C|4741

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKR_092 not in the Motif Atlas

Homologous match to IL_8C3A_130

Geometric discrepancy: 0.2881

The information below is about IL_8C3A_130

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8FKR|1|L3|C|4739
8FKR|1|L3|G|4740
8FKR|1|L3|C|4741
8FKR|1|L3|G|4742
*
8FKR|1|L3|C|4958
8FKR|1|L3|U|4959
8FKR|1|L3|G|4960

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L17

Chain NS

Ribosome production factor 1