IL_8FKS_021

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GAAC*GAGUUCAAGAGGGC

Length

18 nucleotides

Bulged bases

8FKS|1|L3|G|409, 8FKS|1|L3|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKS_021 not in the Motif Atlas

Homologous match to IL_8C3A_015

Geometric discrepancy: 0.1786

The information below is about IL_8C3A_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.7

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

8FKS|1|L3|G|387
8FKS|1|L3|A|388
8FKS|1|L3|A|389
8FKS|1|L3|C|390
*
8FKS|1|L3|G|401
8FKS|1|L3|A|402
8FKS|1|L3|G|403
8FKS|1|L3|U|404
8FKS|1|L3|U|405
8FKS|1|L3|C|406
8FKS|1|L3|A|407
8FKS|1|L3|A|408
8FKS|1|L3|G|409
8FKS|1|L3|A|410
8FKS|1|L3|G|411
8FKS|1|L3|G|412
8FKS|1|L3|G|413
8FKS|1|L3|C|414

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L1

5.8S ribosomal RNA; 5.8S rRNA

Chain LA

60S ribosomal protein L17

Chain LI

60S ribosomal protein L26