IL_8FKS_025

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GAG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKS_025 not in the Motif Atlas

Geometric match to IL_5TBW_042

Geometric discrepancy: 0.148

The information below is about IL_5TBW_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8FKS|1|L3|G|462
8FKS|1|L3|A|463
8FKS|1|L3|G|464
*
8FKS|1|L3|C|691
8FKS|1|L3|A|692
8FKS|1|L3|C|693

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LL

60S ribosomal protein L28

Chain SC

60S ribosomal protein L6