IL_8FKS_038

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CGAG*CGAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKS_038 not in the Motif Atlas

Geometric match to IL_5J7L_333

Geometric discrepancy: 0.1671

The information below is about IL_5J7L_333

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.15

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

34

Unit IDs

8FKS|1|L3|C|1431
8FKS|1|L3|G|1432
8FKS|1|L3|A|1433
8FKS|1|L3|G|1434
*
8FKS|1|L3|C|1450
8FKS|1|L3|G|1451
8FKS|1|L3|A|1452
8FKS|1|L3|G|1453

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L18