IL_8FKS_076

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

UGC*GGGG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKS_076 not in the Motif Atlas

Geometric match to IL_6DME_003

Geometric discrepancy: 0.1958

The information below is about IL_6DME_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_75527.2

Basepair signature

cWW-cWW-cSH-cWW

Number of instances in this motif group

10

Unit IDs

8FKS|1|L3|U|4638
8FKS|1|L3|G|4639
8FKS|1|L3|C|4640
*
8FKS|1|L3|G|4658
8FKS|1|L3|G|4659
8FKS|1|L3|G|4660
8FKS|1|L3|G|4661

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NG

RRP15-like protein

Chain NN

Suppressor of SWI4 1 homolog

Chain SV

Probable ribosome biogenesis protein RLP24