IL_8FKS_077

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CU*AUG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKS_077 not in the Motif Atlas

Geometric match to IL_6IV9_001

Geometric discrepancy: 0.2748

The information below is about IL_6IV9_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8FKS|1|L3|C|4640
8FKS|1|L3|U|4641
*
8FKS|1|L3|A|4656
8FKS|1|L3|U|4657
8FKS|1|L3|G|4658

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NG

RRP15-like protein

Chain NN

Suppressor of SWI4 1 homolog