IL_8FKS_089

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CG*UCG

Length

5 nucleotides

Bulged bases

8FKS|1|L3|C|5054

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKS_089 not in the Motif Atlas

Homologous match to IL_8C3A_137

Geometric discrepancy: 0.4846

The information below is about IL_8C3A_137

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

8FKS|1|L3|C|4996
8FKS|1|L3|G|4997
*
8FKS|1|L3|U|5053
8FKS|1|L3|C|5054
8FKS|1|L3|G|5055

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LN

60S ribosomal protein L3

Chain NG

RRP15-like protein

Chain NN

Suppressor of SWI4 1 homolog