IL_8FKS_093

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKS_093 not in the Motif Atlas

Geometric match to IL_4V9F_100

Geometric discrepancy: 0.2098

The information below is about IL_4V9F_100

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_58355.2

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

43

Unit IDs

8FKS|1|L3|A|5014
8FKS|1|L3|G|5015
8FKS|1|L3|A|5016
8FKS|1|L3|G|5017
*
8FKS|1|L3|C|5032
8FKS|1|L3|G|5033
8FKS|1|L3|A|5034
8FKS|1|L3|U|5035

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NG

RRP15-like protein