IL_8FKS_096

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CGGGG*CGCCGUG

Length

12 nucleotides

Bulged bases

8FKS|1|L3|G|1359, 8FKS|1|L3|C|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FKS|1|L3|C|1357
8FKS|1|L3|G|1358
8FKS|1|L3|G|1359
8FKS|1|L3|G|1360
8FKS|1|L3|G|1361
*
8FKS|1|L3|C|1376
8FKS|1|L3|G|1377
8FKS|1|L3|C|1378
8FKS|1|L3|C|1379
8FKS|1|L3|G|1380
8FKS|1|L3|U|1381
8FKS|1|L3|G|1382

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L6

60S ribosomal protein L13

Chain L9

60S ribosomal protein L15

Chain SA

60S ribosomal protein L4

Chain SO

Ribosome biogenesis protein BRX1 homolog

Chain SZ

Nucleolar protein 16