IL_8FKT_028

3D structure

PDB id

8FKT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

CC*GAGGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKT_028 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1188

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8FKT|1|L3|C|712
8FKT|1|L3|C|713
*
8FKT|1|L3|G|955
8FKT|1|L3|A|956
8FKT|1|L3|G|957
8FKT|1|L3|G|958
8FKT|1|L3|G|1283
8FKT|1|L3|G|1284

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L32

Chain SA

60S ribosomal protein L4

Chain SC

60S ribosomal protein L6