IL_8FKT_060

3D structure

PDB id

8FKT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

8FKT|1|L3|A|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKT_060 not in the Motif Atlas

Homologous match to IL_5TBW_060

Geometric discrepancy: 0.593

The information below is about IL_5TBW_060

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

8FKT|1|L3|U|2312
8FKT|1|L3|A|2313
8FKT|1|L3|G|2314
*
8FKT|1|L3|C|2325
8FKT|1|L3|G|2326

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L1

5.8S ribosomal RNA; 5.8S rRNA

Chain LQ

60S ribosomal protein L32

Chain NM

Protein MAK16 homolog

Chain NS

Ribosome production factor 1