IL_8FKU_021

3D structure

PDB id

8FKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GAAC*GAGUUCAAGAGGGC

Length

18 nucleotides

Bulged bases

8FKU|1|L3|G|409, 8FKU|1|L3|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKU_021 not in the Motif Atlas

Homologous match to IL_8C3A_015

Geometric discrepancy: 0.1769

The information below is about IL_8C3A_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.7

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

8FKU|1|L3|G|387
8FKU|1|L3|A|388
8FKU|1|L3|A|389
8FKU|1|L3|C|390
*
8FKU|1|L3|G|401
8FKU|1|L3|A|402
8FKU|1|L3|G|403
8FKU|1|L3|U|404
8FKU|1|L3|U|405
8FKU|1|L3|C|406
8FKU|1|L3|A|407
8FKU|1|L3|A|408
8FKU|1|L3|G|409
8FKU|1|L3|A|410
8FKU|1|L3|G|411
8FKU|1|L3|G|412
8FKU|1|L3|G|413
8FKU|1|L3|C|414

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L1

5.8S ribosomal RNA; 5.8S rRNA

Chain LA

60S ribosomal protein L17

Chain LI

60S ribosomal protein L26