IL_8FKV_007

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GCG*CC

Length

5 nucleotides

Bulged bases

8FKV|1|L1|C|150

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKV_007 not in the Motif Atlas

Geometric match to IL_7A0S_032

Geometric discrepancy: 0.2952

The information below is about IL_7A0S_032

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

8FKV|1|L1|G|149
8FKV|1|L1|C|150
8FKV|1|L1|G|151
*
8FKV|1|L3|C|6
8FKV|1|L3|C|7

Current chains

Chain L1

5.8S rRNA

Chain L3

28S rRNA

Nearby chains

Chain L9

60S ribosomal protein L15

Chain LH

60S ribosomal protein L23a

Chain SE

60S ribosomal protein L7a

Chain SM

Pescadillo homolog