IL_8FKV_010

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GCUC*GUC

Length

7 nucleotides

Bulged bases

8FKV|1|L2|C|61

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKV_010 not in the Motif Atlas

Geometric match to IL_4V88_426

Geometric discrepancy: 0.2237

The information below is about IL_4V88_426

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

8FKV|1|L2|G|56
8FKV|1|L2|C|61
8FKV|1|L2|U|62
8FKV|1|L2|C|63
*
8FKV|1|L2|G|87
8FKV|1|L2|U|88
8FKV|1|L2|C|89

Current chains

Chain L2

ITS2 rRNA

Nearby chains

Chain SH

MKI67 FHA domain-interacting nucleolar phosphoprotein

Chain SL

Ribosomal L1 domain-containing protein 1

Chain SW

ATP-dependent RNA helicase DDX18