IL_8FKV_017

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

8FKV|1|L3|C|181

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKV_017 not in the Motif Atlas

Geometric match to IL_3HHN_003

Geometric discrepancy: 0.2601

The information below is about IL_3HHN_003

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

8FKV|1|L3|C|180
8FKV|1|L3|C|181
8FKV|1|L3|G|182
*
8FKV|1|L3|C|255
8FKV|1|L3|G|256

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L6

60S ribosomal protein L13

Chain SO

Ribosome biogenesis protein BRX1 homolog