IL_8FKV_023

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GC*GUC

Length

5 nucleotides

Bulged bases

8FKV|1|L3|U|1297

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKV_023 not in the Motif Atlas

Geometric match to IL_6JQ5_006

Geometric discrepancy: 0.2818

The information below is about IL_6JQ5_006

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8FKV|1|L3|G|448
8FKV|1|L3|C|449
*
8FKV|1|L3|G|1296
8FKV|1|L3|U|1297
8FKV|1|L3|C|1298

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L32

Chain LT

60S ribosomal protein L35a

Chain NS

Ribosome production factor 1