IL_8FKV_031

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CCG*CCG

Length

6 nucleotides

Bulged bases

8FKV|1|L3|C|738, 8FKV|1|L3|C|925

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKV_031 not in the Motif Atlas

Geometric match to IL_5J7L_341

Geometric discrepancy: 0.1851

The information below is about IL_5J7L_341

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42626.2

Basepair signature

cWW-cWW

Number of instances in this motif group

14

Unit IDs

8FKV|1|L3|C|737
8FKV|1|L3|C|738
8FKV|1|L3|G|739
*
8FKV|1|L3|C|924
8FKV|1|L3|C|925
8FKV|1|L3|G|926

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L8

60S ribosomal protein L14