IL_8FKV_053
3D structure
- PDB id
- 8FKV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State D1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.47 Å
Loop
- Sequence
- GUGGC*GAAUC
- Length
- 10 nucleotides
- Bulged bases
- 8FKV|1|L3|G|1975
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FKV_053 not in the Motif Atlas
- Homologous match to IL_8C3A_058
- Geometric discrepancy: 0.371
- The information below is about IL_8C3A_058
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_30542.5
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8FKV|1|L3|G|1973
8FKV|1|L3|U|1974
8FKV|1|L3|G|1975
8FKV|1|L3|G|1976
8FKV|1|L3|C|1977
*
8FKV|1|L3|G|1989
8FKV|1|L3|A|1990
8FKV|1|L3|A|1991
8FKV|1|L3|U|1992
8FKV|1|L3|C|1993
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain BA
- 60S ribosomal protein L12
- Chain NF
- Ribosome biogenesis protein NSA2 homolog
- Chain NI
- ATP-dependent RNA helicase DDX54
- Chain SQ
- mRNA turnover protein 4 homolog
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