IL_8FKV_055

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CCG*CG

Length

5 nucleotides

Bulged bases

8FKV|1|L3|C|2084

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKV_055 not in the Motif Atlas

Geometric match to IL_3W3S_001

Geometric discrepancy: 0.3311

The information below is about IL_3W3S_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

8FKV|1|L3|C|2083
8FKV|1|L3|C|2084
8FKV|1|L3|G|2085
*
8FKV|1|L3|C|2272
8FKV|1|L3|G|2273

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L18

Chain LQ

60S ribosomal protein L32

Chain SA

60S ribosomal protein L4

Chain SD

60S ribosomal protein L7