IL_8FKV_059

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UAG*CG

Length

5 nucleotides

Bulged bases

8FKV|1|L3|A|2313

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKV_059 not in the Motif Atlas

Geometric match to IL_5WWT_001

Geometric discrepancy: 0.168

The information below is about IL_5WWT_001

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8FKV|1|L3|U|2312
8FKV|1|L3|A|2313
8FKV|1|L3|G|2314
*
8FKV|1|L3|C|2325
8FKV|1|L3|G|2326

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L1

5.8S ribosomal RNA; 5.8S rRNA

Chain LQ

60S ribosomal protein L32

Chain NM

Protein MAK16 homolog

Chain NS

Ribosome production factor 1