IL_8FKV_062

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

AGAUG*CAGUGAAU

Length

13 nucleotides

Bulged bases

8FKV|1|L3|U|2554, 8FKV|1|L3|G|2574, 8FKV|1|L3|U|2575, 8FKV|1|L3|G|2576

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FKV|1|L3|A|2551
8FKV|1|L3|G|2552
8FKV|1|L3|A|2553
8FKV|1|L3|U|2554
8FKV|1|L3|G|2555
*
8FKV|1|L3|C|2572
8FKV|1|L3|A|2573
8FKV|1|L3|G|2574
8FKV|1|L3|U|2575
8FKV|1|L3|G|2576
8FKV|1|L3|A|2765
8FKV|1|L3|A|2766
8FKV|1|L3|U|2767

Current chains

Chain L3

28S rRNA

Nearby chains

Chain SI

60S ribosomal protein L7-like 1

Chain SM

Pescadillo homolog