IL_8FKV_074

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UGA*UGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKV_074 not in the Motif Atlas

Geometric match to IL_3CZW_002

Geometric discrepancy: 0.1009

The information below is about IL_3CZW_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

8FKV|1|L3|U|3950
8FKV|1|L3|G|3951
8FKV|1|L3|A|3952
*
8FKV|1|L3|U|4060
8FKV|1|L3|G|4061
8FKV|1|L3|A|4062

Current chains

Chain L3

28S rRNA

Nearby chains