IL_8FKV_075

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GGUGUAGAAUAA*UAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FKV|1|L3|G|3955
8FKV|1|L3|G|3956
8FKV|1|L3|U|3957
8FKV|1|L3|G|3958
8FKV|1|L3|U|3959
8FKV|1|L3|A|3960
8FKV|1|L3|G|3961
8FKV|1|L3|A|3962
8FKV|1|L3|A|3963
8FKV|1|L3|U|3964
8FKV|1|L3|A|3965
8FKV|1|L3|A|3966
*
8FKV|1|L3|U|4055
8FKV|1|L3|A|4056
8FKV|1|L3|C|4057

Current chains

Chain L3

28S rRNA

Nearby chains

Chain BB

60S ribosomal protein L10a

Chain SY

Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase