IL_8FKV_079

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

CU*AACGUG

Length

8 nucleotides

Bulged bases

8FKV|1|L3|C|4519

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKV_079 not in the Motif Atlas

Homologous match to IL_5TBW_109

Geometric discrepancy: 0.3306

The information below is about IL_5TBW_109

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_24807.2

Basepair signature

cWW-cWW

Number of instances in this motif group

16

Unit IDs

8FKV|1|L3|C|4458
8FKV|1|L3|U|4459
*
8FKV|1|L3|A|4517
8FKV|1|L3|A|4518
8FKV|1|L3|C|4519
8FKV|1|L3|G|4520
8FKV|1|L3|U|4521
8FKV|1|L3|G|4522

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LN

60S ribosomal protein L3

Chain SR

GTP-binding protein 4