IL_8FKW_021

3D structure

PDB id

8FKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAAC*GAGUUCAAGAGGGC

Length

18 nucleotides

Bulged bases

8FKW|1|L3|G|409, 8FKW|1|L3|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKW_021 not in the Motif Atlas

Homologous match to IL_8C3A_015

Geometric discrepancy: 0.1798

The information below is about IL_8C3A_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.7

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

8FKW|1|L3|G|387
8FKW|1|L3|A|388
8FKW|1|L3|A|389
8FKW|1|L3|C|390
*
8FKW|1|L3|G|401
8FKW|1|L3|A|402
8FKW|1|L3|G|403
8FKW|1|L3|U|404
8FKW|1|L3|U|405
8FKW|1|L3|C|406
8FKW|1|L3|A|407
8FKW|1|L3|A|408
8FKW|1|L3|G|409
8FKW|1|L3|A|410
8FKW|1|L3|G|411
8FKW|1|L3|G|412
8FKW|1|L3|G|413
8FKW|1|L3|C|414

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L1

5.8S ribosomal RNA; 5.8S rRNA

Chain LA

60S ribosomal protein L17

Chain LI

60S ribosomal protein L26