IL_8FKW_079

3D structure

PDB id

8FKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

8FKW|1|L3|C|4349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKW_079 not in the Motif Atlas

Geometric match to IL_5WTK_001

Geometric discrepancy: 0.1679

The information below is about IL_5WTK_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8FKW|1|L3|G|4347
8FKW|1|L3|A|4348
8FKW|1|L3|C|4349
8FKW|1|L3|C|4350
*
8FKW|1|L3|G|4364
8FKW|1|L3|C|4365

Current chains

Chain L3

28S rRNA

Nearby chains

Chain SY

Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase