IL_8FKW_096

3D structure

PDB id

8FKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CGG*CGUG

Length

7 nucleotides

Bulged bases

8FKW|1|L3|U|4950

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKW_096 not in the Motif Atlas

Homologous match to IL_8GLP_167

Geometric discrepancy: 0.142

The information below is about IL_8GLP_167

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31990.1

Basepair signature

cWW-tWW-cWW

Number of instances in this motif group

2

Unit IDs

8FKW|1|L3|C|4749
8FKW|1|L3|G|4750
8FKW|1|L3|G|4751
*
8FKW|1|L3|C|4948
8FKW|1|L3|G|4949
8FKW|1|L3|U|4950
8FKW|1|L3|G|4951

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LT

60S ribosomal protein L35a

Chain NK

Protein LLP homolog