IL_8FKY_021

3D structure

PDB id

8FKY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GAAC*GAGUUCAAGAGGGC

Length

18 nucleotides

Bulged bases

8FKY|1|L3|G|409, 8FKY|1|L3|G|413

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKY_021 not in the Motif Atlas

Homologous match to IL_8C3A_015

Geometric discrepancy: 0.1724

The information below is about IL_8C3A_015

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.7

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

8FKY|1|L3|G|387
8FKY|1|L3|A|388
8FKY|1|L3|A|389
8FKY|1|L3|C|390
*
8FKY|1|L3|G|401
8FKY|1|L3|A|402
8FKY|1|L3|G|403
8FKY|1|L3|U|404
8FKY|1|L3|U|405
8FKY|1|L3|C|406
8FKY|1|L3|A|407
8FKY|1|L3|A|408
8FKY|1|L3|G|409
8FKY|1|L3|A|410
8FKY|1|L3|G|411
8FKY|1|L3|G|412
8FKY|1|L3|G|413
8FKY|1|L3|C|414

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L1

5.8S ribosomal RNA; 5.8S rRNA

Chain LA

60S ribosomal protein L17

Chain LI

60S ribosomal protein L26