IL_8FKY_036
3D structure
- PDB id
- 8FKY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State F)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- GG*CGCC
- Length
- 6 nucleotides
- Bulged bases
- 8FKY|1|L3|C|1378
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FKY_036 not in the Motif Atlas
- Geometric match to IL_1U9S_003
- Geometric discrepancy: 0.2479
- The information below is about IL_1U9S_003
- Detailed Annotation
- Major groove intercalation
- Broad Annotation
- Major groove intercalation
- Motif group
- IL_71421.2
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 35
Unit IDs
8FKY|1|L3|G|1360
8FKY|1|L3|G|1361
*
8FKY|1|L3|C|1376
8FKY|1|L3|G|1377
8FKY|1|L3|C|1378
8FKY|1|L3|C|1379
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain L6
- 60S ribosomal protein L13
- Chain L9
- 60S ribosomal protein L15
- Chain SA
- 60S ribosomal protein L4
- Chain SO
- Ribosome biogenesis protein BRX1 homolog
- Chain SZ
- Nucleolar protein 16
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