IL_8FKY_067

3D structure

PDB id

8FKY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GGAC*GC

Length

6 nucleotides

Bulged bases

8FKY|1|L3|G|2476, 8FKY|1|L3|A|2477

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKY_067 not in the Motif Atlas

Geometric match to IL_1U9S_003

Geometric discrepancy: 0.2374

The information below is about IL_1U9S_003

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_71421.2

Basepair signature

cWW-cWW

Number of instances in this motif group

35

Unit IDs

8FKY|1|L3|G|2475
8FKY|1|L3|G|2476
8FKY|1|L3|A|2477
8FKY|1|L3|C|2478
*
8FKY|1|L3|G|2503
8FKY|1|L3|C|2504

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L1

5.8S ribosomal RNA; 5.8S rRNA

Chain LH

60S ribosomal protein L23a

Chain SM

Pescadillo homolog