IL_8FKY_069

3D structure

PDB id

8FKY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GG*CUC

Length

5 nucleotides

Bulged bases

8FKY|1|L3|U|2769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKY_069 not in the Motif Atlas

Geometric match to IL_7KVT_002

Geometric discrepancy: 0.2791

The information below is about IL_7KVT_002

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

8FKY|1|L3|G|2549
8FKY|1|L3|G|2550
*
8FKY|1|L3|C|2768
8FKY|1|L3|U|2769
8FKY|1|L3|C|2770

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LR

60S ribosomal protein L34

Chain SI

60S ribosomal protein L7-like 1

Chain SM

Pescadillo homolog

Chain SS

Ribosome biogenesis protein BOP1