IL_8FKY_073

3D structure

PDB id

8FKY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GGA*UU

Length

5 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKY_073 not in the Motif Atlas

Geometric match to IL_4WF9_007

Geometric discrepancy: 0.2886

The information below is about IL_4WF9_007

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_15011.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

54

Unit IDs

8FKY|1|L3|G|2619
8FKY|1|L3|G|2620
8FKY|1|L3|A|2621
*
8FKY|1|L3|U|2635
8FKY|1|L3|U|2636

Current chains

Chain L3

28S rRNA

Nearby chains

Chain BC

WD repeat-containing protein 55

Chain LD

60S ribosomal protein L19