IL_8FKY_082

3D structure

PDB id

8FKY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GAAGAC*GAUAAC

Length

12 nucleotides

Bulged bases

8FKY|1|L3|G|3907

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8FKY|1|L3|G|3904
8FKY|1|L3|A|3905
8FKY|1|L3|A|3906
8FKY|1|L3|G|3907
8FKY|1|L3|A|3908
8FKY|1|L3|C|3909
*
8FKY|1|L3|G|4393
8FKY|1|L3|A|4394
8FKY|1|L3|U|4395
8FKY|1|L3|A|4396
8FKY|1|L3|A|4397
8FKY|1|L3|C|4398

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NF

Ribosome biogenesis protein NSA2 homolog

Chain SJ

pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3

Chain SN

Probable rRNA-processing protein EBP2

Chain SR

GTP-binding protein 4