IL_8FKY_085

3D structure

PDB id

8FKY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

UAG*UGGG

Length

7 nucleotides

Bulged bases

8FKY|1|L3|G|4183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKY_085 not in the Motif Atlas

Homologous match to IL_8C3A_100

Geometric discrepancy: 0.2013

The information below is about IL_8C3A_100

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_38958.10

Basepair signature

cWW-cWW-cWW-tHS

Number of instances in this motif group

9

Unit IDs

8FKY|1|L3|U|3927
8FKY|1|L3|A|3928
8FKY|1|L3|G|3929
*
8FKY|1|L3|U|4181
8FKY|1|L3|G|4182
8FKY|1|L3|G|4183
8FKY|1|L3|G|4184

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NH

60S ribosome subunit biogenesis protein NIP7 homolog

Chain ST

Ribosome biogenesis regulatory protein homolog

Chain SY

Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase