IL_8FKY_087

3D structure

PDB id

8FKY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CA*UCG

Length

5 nucleotides

Bulged bases

8FKY|1|L3|C|4064

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKY_087 not in the Motif Atlas

Geometric match to IL_1S03_002

Geometric discrepancy: 0.2908

The information below is about IL_1S03_002

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_05642.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

60

Unit IDs

8FKY|1|L3|C|3948
8FKY|1|L3|A|3949
*
8FKY|1|L3|U|4063
8FKY|1|L3|C|4064
8FKY|1|L3|G|4065

Current chains

Chain L3

28S rRNA

Nearby chains

Chain SY

Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase