IL_8FKY_103

3D structure

PDB id

8FKY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

UGC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKY_103 not in the Motif Atlas

Geometric match to IL_3R1C_032

Geometric discrepancy: 0.1068

The information below is about IL_3R1C_032

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_08424.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

68

Unit IDs

8FKY|1|L3|U|4638
8FKY|1|L3|G|4639
8FKY|1|L3|C|4640
*
8FKY|1|L3|G|4659
8FKY|1|L3|G|4660
8FKY|1|L3|G|4661

Current chains

Chain L3

28S rRNA

Nearby chains

Chain SV

Probable ribosome biogenesis protein RLP24